Département de Biologie

Irene Gregory-Eaves

aseel.shakra@mail.mcgill.ca — Thu, 06 Jul 2023 11:33:33 +0000

Irene

Gregory-Eaves

Titre:

Professor

Titre(s) académique(s):

Canada Research Chair in Freshwater Ecology and Global Change

Adresse:

Stewart Biology Building, Room N4/18

Téléphone:

514-398-6425

Adresse de courriel:

irene.gregory-eaves [at] mcgill.ca

Lien(s):

Gregory-Eaves Lab

Domaines de recherche:

Conservation, Ecology, Evolution and Behaviour

Areas of expertise:

My lab’s long term research goals are to make essential progress in our understanding of the structure and functioning of lakes and to quantify how these ecosystems have responded to the accelerated rate of change introduced by human activities over the Anthropocene. Central to this program is the ability to develop, scrutinize and integrate data from different sources: lake surveys, time series and field experiments.

Nom indexable:

Gregory-Eaves

Gregor Fussmann

aseel.shakra@mail.mcgill.ca — Thu, 06 Jul 2023 11:33:33 +0000

Gregor

Fussmann

Titre:

Professor

Titre(s) académique(s):

Chair, Department of Biology

Strathcona Chair in Zoology

Adresse:

Stewart Biology Building, Room N8/15

Téléphone:

514-398-1370

Adresse de courriel:

gregor.fussmann [at] mcgill.ca

Lien(s):

The Fussmann Lab

Domaines de recherche:

Conservation, Ecology, Evolution and Behaviour

Biographie:

1996 PhD, Max Planck Institute for Limnology
1997 Postdoc, Visiting Assistant Professor, Cornell University
2001 Assistant Professor, University of Potsdam, Germany
2004 Associate Professor, ��VR��Ƶ
2016 Professor, ��VR��Ƶ

Areas of expertise:

Community ecology, Evolutionary ecology, Aquatic ecology

Recherches en cours:

Population and community dynamics
The interplay of ecological and evolutionary dynamics (eco-evolutionary dynamics)
Freshwater community response to global/climate change
Nutrient limitation in lakes - including CO₂
Freshwater winter and under-ice ecology
Host-parasite dynamics

Approach: both theoretical and empirical (laboratory and field experiments with aquatic organisms)

Directions de mémoires et de thèses:

MSc: Danny Gedig, Sabrina Therrien

MSc (recent): Kaushar Kagzi, Allegra Pearce

PhD (recent): Marie-Pier Hébert, Egor Katkov, Naíla Barbosa da Costa (U de Montréal)

Postdocs (recent): Egor Katkov, Allison Roth

Cours:

BIOL 305. Animal Diversity.

Credits: 3

Offered by: Biology (Faculty of Science)

This course is not offered this catalogue year.

Description

The characteristics of the major groups of animals, their ancestry, history and relationship to one another. The processes of speciation, adaptive radiation and extinction responsible for diversity. Methods for constructing of phylogenies, for comparing phenotypes, and for estimating and analyzing diversity.

Winter
2 hours lecture and 1 three-hour laboratory
Prerequisite: BIOL 215 or both ENVR 200 and ENVR 202

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BIOL 311. Advanced Methods in Organismal Biology.

Credits: 3

Offered by: Biology (Faculty of Science)

This course is not offered this catalogue year.

Description

Application of methods and techniques used by organismal biologists, paired with the design of sampling programs to test hypotheses using observational or experimental data, and the analysis of data. Topics include DNA barcoding/metabarcoding and experimental evolution.

Prerequisites: BIOL 200 or BIOL 219; BIOL 206, COMP 204, and BIOL 202 or BIOL 302.
Restrictions: Not open to students who have taken BIOL 206 prior to Fall 2020

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BIOL 395. Quantitative Biology Seminar.

Credits: 1

Offered by: Biology (Faculty of Science)

This course is not offered this catalogue year.

Description

Overview of concepts and current research in quantitative biology; theoretical ecology and evolution, computational biology, and physical biology.

Fall
Prerequisites: BIOL 219; or BIOL 200 plus BIOL 201 or ANAT 212 or BIOC 212; CHEM 212; COMP 202 or COMP 204 or COMP 250; MATH 222; or permission of instructor.
Restriction: Open to U2 and U3 students in the following programs: B.Sc. Major and Honours Biology-- Quantitative Biology option; B.Sc. Major and Honours Computer Science and Biology; BSc Major Biology and Mathematics; BSc Major Physiology and Mathematics; BSc Major Physiology and Physics; BSc Major and Honours Chemistry-- Biophysical Chemistry; and B.Sc. Major and Honours Physics--Biological Physics.

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Publications (sélection):

MP Hébert, BE Beisner, M Rautio, GF Fussmann (2021) Warming winters in lakes: Later ice onset promotes consumer overwintering and shapes springtime planktonic food webs. Proceedings of the National Academy of Sciences U.S.A. 118, e2114840118.

V Fugère, MP Hébert, NB Costa, CCY Xu, RDH Barrett, BE Beisner, G Bell, GF Fussmann, BJ Shapiro, V Yargeau, A Gonzalez (2020) Community rescue in experimental phytoplankton communities facing severe herbicide pollution. Nature Ecology & Evolution 4, 578–588.

B Blasius, L Rudolf, G Weithoff, U Gaedke, GF Fussmann (2020) Long-term cyclic persistence in an experimental predator-prey system. Nature 577, 226-230.

E Katkov, E Low-Décarie, GF Fussmann (2020) Intra-annual variation in the response of phytoplankton to factorial manipulation of N, P and CO₂ in a temperate mesotrophic lake. Freshwater Biology 65, 960-970.

CP Tadiri, ME Scott, GF Fussmann (2018) Microparasite dispersal in metapopulations: A boon or bane to the host population? Proceedings B 285, 20181519.

E Low-Décarie, GF Fussmann, G Bell (2014) Aquatic primary production in a high-CO₂ world. Trends in Ecology & Evolution 29, 223-232.

F Dargent, ME Scott, AP Hendry, GF Fussmann (2013) Experimental elimination of parasites in nature leads to the evolution of increased resistance in hosts. Proceedings B 280, 20132371.

C Kovach-Orr, GF Fussmann (2013) Evolutionary and plastic rescue in multitrophic model communities. Philosophical Transactions B 368, 20120084.

GF Fussmann, A Gonzalez (2013) Evolutionary rescue can maintain an oscillating community undergoing environmental change. Interface Focus 3, 20130036.

GF Fussmann, B Blasius (2005) Community response to enrichment is highly sensitive to model structure. Biology Letters 1, 9-12.

T Yoshida, LE Jones, SP Ellner, GF Fussmann, NG Hairston Jr. (2003) Rapid evolution drives ecological dynamics in a predator-prey system. Nature 424, 303-306.

GF Fussmann, SP Ellner, KW Shertzer, NG Hairston Jr. (2000) Crossing the Hopf bifurcation in a live predator-prey system. Science 290, 1358-1360.

Nom indexable:

Fussmann

Lauren Chapman

aseel.shakra@mail.mcgill.ca — Thu, 06 Jul 2023 11:33:33 +0000

Lauren

Chapman

Téléphone:

514-398-6431

Adresse de courriel:

lauren.chapman [at] mcgill.ca

Nom indexable:

Chapman

Irene Gregory-Eaves

aseel.shakra@mail.mcgill.ca — Thu, 06 Jul 2023 11:33:33 +0000

Irene

Gregory-Eaves

Téléphone:

514-398-6425

Adresse de courriel:

irene.gregory-eaves [at] mcgill.ca

Nom indexable:

Gregory-Eaves

Lauren Chapman

aseel.shakra@mail.mcgill.ca — Thu, 06 Jul 2023 11:33:33 +0000

Lauren

Chapman

Titre(s) académique(s):

Professor, Department of Biology, ��VR��Ƶ (2004-present)
Honorary Lecturer, Makerere University, Kampala, Uganda (1990-present)
Associate Member, ��VR��Ƶ School for Environment (2006-present)
Associate Member, Redpath Museum, ��VR��Ƶ (2009-present)

Adresse:

Stewart Biology Building, Room N3/12A

Téléphone:

514-398-6431

Adresse de courriel:

lauren.chapman [at] mcgill.ca

Lien(s):

The Chapman Lab

Domaines de recherche:

Conservation, Ecology, Evolution and Behaviour

Areas of expertise:

Aquatic ecology and conservation, evolutionary and ecological consequences of respiratory strategies in fishes, ecophysiology, ecomorphology, adaptive divergence, tropical inland waters, Africa. Recent work focuses on divergent selection across oxygen gradients in fishes, the interaction of hypoxia with other environmental stressors (e.g., introduced species, climate warming), and the value of tropical wetlands in the maintenance of fish faunal structure and diversity.

Nom indexable:

Chapman

Gregor Fussmann

aseel.shakra@mail.mcgill.ca — Thu, 06 Jul 2023 11:33:33 +0000

Gregor

Fussmann

Téléphone:

514-398-1370

Adresse de courriel:

gregor.fussmann [at] mcgill.ca

Nom indexable:

Fussmann

Laura Nilson

aseel.shakra@mail.mcgill.ca — Tue, 29 Jun 2021 19:57:59 +0000

Laura

Nilson

Téléphone:

514-398-6448

Adresse de courriel:

laura.nilson [at] mcgill.ca

Nom indexable:

Nilson

Laura Nilson

aseel.shakra@mail.mcgill.ca — Tue, 29 Jun 2021 19:57:59 +0000

Laura

Nilson

Titre:

Professor

Adresse:

Stewart Biology Building, Room N5/8

Téléphone:

514-398-6448

Adresse de courriel:

laura.nilson [at] mcgill.ca

Domaines de recherche:

Molecular, Cellular and Developmental Biology

Areas of expertise:

Developmental genetics in Drosophila melanogaster. Identification and analysis of genes required in the somatic follicle cells of the ovary for patterning of the future embryo. Genetic and molecular analysis of organization and morphogenesis of the ovarian follicular epithelium.

Recherches en cours:

Developmental biology seeks to understand how a single cell, the fertilized egg, can give rise to all the complexity of form and function observed in a multicellular organism. One way to address this extraordinarily complicated question is to approach one early and fundamental aspect: in the earliest stages of development, how is head distinguished from tail, and back from front? What are the positional cues that specify the initial asymmetry along these body axes, and how are the structures the structures in between elaborated?

In many organisms, the first indications of these body axes are already visible at the single cell stage. In some cases asymmetry is triggered by fertilization, when sperm entry provides a cue that defines one end of a future axis. In other cases, the unfertilized egg itself contains molecular information, deposited by the mother during oogenesis, that will ultimately specify the poles of the head-tail, or “anterior-posterior,” and back-front, or “dorsal-ventral,” axes. Since we can trace the origin of these basic body axes back to asymmetries at the single cell stage, addressing larger questions about embryonic development begins with an understanding of the mechanisms that generate asymmetry in the egg. As described below, in these issues we can recognize fundamental themes in developmental biology, such as how an inductive signal can trigger cell fate changes or how molecules can adopt specific subcellular localization patterns.

Why the fly?

We study the generation of asymmetry during the development of the fruit fly, Drosophila melanogaster. One of the major advantages of this model organism is the ability to isolate mutations that disrupt a particular process of interest; identification of the affected gene thus reveals a component critical to the proper function of that process. This approach is powerful because it allows the identification of developmentally important genes, even with no prior knowledge of their possible function. Furthermore, the Drosophila genome project continues to provide a wealth of tools – the complete genome sequence, gene expression data, libraries of mapped random mutations, etc. – that allow the increasingly rapid identification of the genes affected in mutant strains and facilitate the study of particular genes of interest.

Generation of asymmetry during Drosophila oogenesis

Figure 1a (left) | Figure 1b (right)

Our work focuses on the generation of asymmetry during the development of the Drosophila egg. In the ovary, each oocyte develops while interconnected with fifteen sister nurse cells, which function as a source of RNAs and proteins for the developing oocyte and degenerate by the end of oogenesis. Surrounding this cluster of germline cells is an epithelium of somatic follicle cells, which provide yolk and secrete the eggshell (Figure 1a).
Each of these developmental units is called an egg chamber, and the ovary is made up of about sixteen long strings of egg chambers, each functioning as a miniature assembly line for egg production. Notice that the mature egg (Figure 1b) has a complex structure, exhibiting both an anterior-posterior (AP) and a dorsal-ventral (DV) axis. The complex structure of the eggshell implies that the follicle cell epithelium must be regionally specialized in order to secrete an eggshell with the proper shape and surface structures. How do the cells in this initially uniform epithelium sense their position and acquire the ability to produce the appropriate eggshell features? The embryo develops with its axes in register with those of the egg, instructed by localized molecular information incorporated into the egg as it develops.

Polarity along the DV axis

Figure 2

Our work focuses on how asymmetry is initiated and elaborated along the DV axis. This axis is defined by a growth factor, called Gurken, produced by the oocyte. The key to generating asymmetry is that since Gurken is only found on the dorsal side of the oocyte, it activates a receptor tyrosine kinase (the Drosophila homolog of the vertebrate EGF receptor [Egfr]) in the adjacent follicle cells (Figure 2).

Receptor activation triggers a signal transduction pathway that directs follicle cell fate and thus distinguishes dorsal cells, which receive the signal, from ventral cells, which do not. This signaling process, which is refined over time by downstream feedback mechanisms, ultimately determines the structure of the eggshell along its DV dimension. In mutants where either the signal or receptor is absent, no follicle cells are signaled to produce dorsal-appropriate eggshell structures and instead only ventral-like eggshell is secreted. What does the eggshell have to do with the embryo?

While the dorsal follicle cells secrete more elaborate eggshell structures, the ventral follicle cells produce an unknown secreted molecule that acts as the spatial cue that defines the DV axis future embryo. Thus the patterning events initiated by Gurken ultimately govern both eggshell and embryonic development.

Research Overview

Figure 3

A mutation affecting eggshell patterning
One of our research goals is to understand the series of events that are triggered by the initial Gurken signal and instruct the dorsal follicle cells to secrete the dorsal side of the eggshell, including its prominent eggshell appendages. To approach this question, we are studying a gene called capicua. Females lacking capicua function produce eggs with dramatic eggshell defects: the dorsal appendages are very broad and shifted toward the ventral side, with a wider space between them (Figure 3).

This phenotype reflects an expansion of the dorsal side of the eggshell and therefore suggests that more follicle cells have adopted a “dorsal” fate. Increased dorsal follicle cell fate determination suggests an increase in Gurken signaling; indeed, other mutants with similar “dorsalized” phenotypes exhibit an expanded distribution of Gurken within the oocyte.

Surprisingly, however, Gurken is normal in capicua mutant ovaries, suggesting that loss of capicuafunction affects follicle cell fate at a later step. Since mutations in capicua appear to disrupt follicle cell patterning in a previously undescribed manner, the study of capicua function may yield novel insights into how the pattern of follicle cell fates is determined.

Establishment of DV polarity in the germline
To complement our studies of DV patterning in the follicle cell epithelium, we are also investigating the mechanisms that generate asymmetric Gurken localization in the oocyte. The localization of the Gurken protein reflects the localization of its mRNA; in general, subcellular RNA localization requires cis elements within the message as well as subcellular machinery to carry out proper targeting. For the gurken mRNA, regions important for localization have been identified, but how they function is not understood. While some recent work has demonstrated that injected gurken transcripts can be transported dorsally via the oocyte microtubule network, it is unclear whether this mechanism is relevant in vivo. As a first step to understanding how Gurken is localized, we are investigating the source of the gurken mRNA. Is it produced in the nurse cells and transported to the oocyte, like many other oocyte components? Or is it produced in the oocyte itself? Understanding the source of gurken production will allow better evaluation of potential localization mechanisms.

The follicle cell epithelium as a model for wound healing
A final project explores the interactions between follicle cells, rather than their role in DV patterning. This work was initiated when we identified a mutation with a striking effect on the organization of the follicle cell epithelium: when we generate genetically mosaic epithelia composed of both mutant and wild type cells, we find that groups of mutant cells are separated from their neighbors by a smooth boundary. We first noticed this phenotype in the pattern of the follicle cell imprints on the eggshell surface (Figure 4), then looked directly at the follicle cells themselves during oogenesis. Interestingly, in addition to a smooth boundary, levels of filamentous actin are increased at the interface between wild type and mutant cells.

Figure 4a

Figure 4b

These phenotypes resemble the cellular response to small wounds in epithelial monolayers in both vertebrate model systems and Drosophila embryos, where actin accumulates at the edge of each cell facing the wound and forms a “contractile ring” that constricts to close the wound and preserve the integrity of the epithelium. In vertebrate cultured cell systems, cells undergoing programmed cell death are extruded from an epithelial monolayer by a similar mechanism, again maintaining the barrier function of the epithelium.

Are our mutant cells provoking a wound healing response in their neighbors? This general question has two components. First, what is the nature of the defect in our mutant cells? Are they dying and inducing a wound healing response in their neighbors? Though they are able to secrete eggshell and seem to be intact through oogenesis, we are testing for early signs of programmed cell death. We are also working to identify the gene affected by this mutation, which may reveal the underlying cellular defect. Whatever the defect, how do neighboring cells detect and respond to this change? Though recent work has identified some of the molecules that are required for contractile ring assembly, constriction and healing, little is known in Drosophila or other systems about how a cell or group of cells can signal this type of response in adjacent cells. We hope that this work may ultimately allow us to use the genetics of this model organism to address these cell biological questions.

Publications (sélection):

Fregoso Lomas, M.*, De Vito, S.*, Boisclair Lachance, J.-F., Houde, J. and Nilson, L.A. (2016) Determination of EGFR signaling output by opposing gradients of BMP and JAK/STAT activity. Current Biology, http://dx.doi.org/10.1016/j.cub.2016.07.073

Feingold, D., Starc, T., O’Donnell, M.J., Nilson, L.A. and Dent, J.A. (2016) The orphan pentameric ligand-gated ion channel pHCl-2 is gated by pH and regulates fluid secretion in Drosophila Malpighian tubules. Journal of Experimental Biology, 219, 2629-2638

Fregoso Lomas, M., Hails, F., Boisclair Lachance, J.-F. and Nilson, L.A. (2013) Response to the dorsal anterior gradient of EGFR signaling in Drosophila oogenesis is prepatterned by earlier posterior EGFR activation. Cell Reports 4, 791-802.

Laplante, C. and Nilson , L.A. (2011) Asymmetric distribution of Echinoid defines the epidermal leading edge during Drosophila dorsal closure. Journal of Cell Biology, 192, 335-348. [Featured as the “In Focus” summary article for Journal of Cell Biology - Jan. 2011]

Laplante, C., Paul, S.M., Beitel, G., and Nilson, L.A. (2010) Echinoid regulates tracheal morphology and fusion cell fate in Drosophila. Developmental Dynamics 239, 2509-2519. [Featured in "Highlights in Developmental Dynamics" - Feb. 2011]

Boisclair Lachance, J.-F., Fregoso Lomas, M., Eleiche, A., Bouchard Kerr, P. and Nilson, L.A. (2009) Graded Egfr activity patterns the Drosphila eggshell independently of autocrine feedback. Development 136, 2893-2902.

Cáceres, L. and Nilson, L.A. (2009) Translational repression of gurken in the Drosophila oocyte requires the hnRNP Squid in the nurse cells. Developmental Biology 326, 327-334.

Laplante, C. and Nilson, L.A. (2006) Differential expression of the adhesion molecule Echinoid drives epithelial morphogenesis in Drosophila. Development 133, 3255-64.

Pai, L.-M., Wang, P.-Y., Chen, S.-R., Barcelo, G., Chang, W.-L., Nilson, L.A. and Schüpbach, T. (2006) The Drosophila cbl gene downregulates Egfr signaling by two distinct mechanisms. Mechanisms of Development 123, 450-462.

Rounding Atkey, M.R., Boisclair Lachance, J.-F., Walczak, M., Rebello, T. and Nilson, L.A.(2006) Capicua regulates follicle cell fate in the Drosophila ovary through repression of mirror. Development, 133, 2115-2123.

Cáceres L., Nilson L.A. (2005) Production of gurken in the nurse cells is sufficient for axis determination in the Drosophila oocyte. Development 132: 2345-2353.

Goff, D.J., Nilson, L.A. and Morisato, D. (2001) Establishment of dorsal-ventral polarity of the Drosophila egg requires capicua action in ovarian follicle cells. Development 128, 4553-4562.

Nilson, L.A., and Schüpbach, T. (1999). EGF receptor signaling in Drosophila oogenesis. Curr. Topics in Dev. Biol. 44, 203-244.

Nilson, L.A., and Schüpbach, T. (1998). Localized requirements for windbeutel and pipe reveal a dorsoventral prepattern within the follicular epithelium of the Drosophila ovary. Cell 93, 253-262.

Nom indexable:

Nilson

Ehab Abouheif

aseel.shakra@mail.mcgill.ca — Mon, 05 Oct 2020 13:06:22 +0000

Ehab

Abouheif

Téléphone:

514-398-4400 Ext 00378

514-398-7190

Adresse de courriel:

ehab.abouheif [at] mcgill.ca

Nom indexable:

Abouheif

Graham Bell

aseel.shakra@mail.mcgill.ca — Mon, 05 Oct 2020 13:06:22 +0000

Graham

Bell

Téléphone:

514-398-6458

Adresse de courriel:

graham.bell [at] mcgill.ca

Nom indexable:

Bell